PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G252600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 277aa    MW: 30392.9 Da    PI: 8.3499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G252600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.8e-1484130354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  Prupe.2G252600.1.p  84 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 130
                         79*************************8.....7****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.33281130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1383134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1184130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1584133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-1184133No hitNo description
SMARTSM003538.6E-1287136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.60E-5182247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MESMVLEKCW LFLAMENCYC AGPQGATWAP YNSAALSNES SSFPLPWPPH ASSSTQFQFC  60
GFPNSWSATA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL  120
GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSGSNNINM NKSRCSIVIR  180
ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK  240
QSLKLVLSKI CASSMAPNCR IRSKRQRFFL PFQYPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894200.0KP689420.1 Prunus pseudocerasus isolate Unigene9695 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233781.10.0PREDICTED: transcription factor bHLH51
TrEMBLA0A0U2RKE70.0A0A0U2RKE7_9R
STRINGPOPTR_0008s07090.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-48bHLH family protein